miRBase entry: rlcv-mir-rL1-35

Stem-loop rlcv-mir-rL1-35


Accession
MI0015356
Description
Rhesus lymphocryptovirus rlcv-mir-rL1-35 precursor miRNA
Gene family
MIPF0001051; mir-BART13


Sequence

gggcuccccgguCACCGGCUCACAGCUAGUACGGacgauuauuggcucUGUAACUUGUCGUGGGACGGGcaucgaugugcuc
((((.(..((((..(((.(((((.((.(((((((((.(....).).))))).))).)).))))).)))..))))..).))))

Structure
    u cc    CA   G     A  U   -     - g u 
gggc c  cggu  CCG CUCAC GC AGU ACGGa c a u
|||| |  ||||  ||| ||||| || ||| ||||| | |  
cucg g  gcua  GGC GGGUG UG UCA UGUcu g u a
    u ua    cG   A     C  U   A     c g u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rlcv-miR-rL1-35-5p

Accession MIMAT0016962
Description Rhesus lymphocryptovirus rlcv-miR-rL1-35-5p mature miRNA
Sequence 13 - CACCGGCUCACAGCUAGUACGG - 34
Evidence experimental
Illumina [1]

Mature rlcv-miR-rL1-35-3p

Accession MIMAT0016963
Description Rhesus lymphocryptovirus rlcv-miR-rL1-35-3p mature miRNA
Sequence 49 - UGUAACUUGUCGUGGGACGGG - 69
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20219930
    Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
    "Riley KJ, Rabinowitz GS, Steitz JA"
    "J Virol (2010) 84:5148-5157

  2. PubMed ID: 24257599
    Evolutionary conservation of primate lymphocryptovirus microRNA targets
    "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
    "J Virol (2014) 88:1617-1635