Stem-loop vvi-MIR2111

Accession

MI0015370

Description

Vitis vinifera vvi-MIR2111 precursor miRNA

Gene family

MIPF0000754; MIR2111

Literature search

2 open access papers mention vvi-MIR2111
(3 sentences)

Sequence

1361 reads, 92 reads per million, 2 experiments

gcaauauugggucaggaucgggUAAUCUGCAUCCUGAGGUCUAgauaaguauaucuccguugcagcuaGUCCUCUGGUUGCAGAUUACUucuuccucacugccaaugc
....((((((((.((((..((((((((((((.((.((((.((((....(((.........)))..)))).)))).)).))))))))))))..)))).))..)))))).

Structure

gcaa      --  c    uc            U  U    U    auaa   uau 
    uauugg  gu agga  gggUAAUCUGCA CC GAGG CUAg    gua   c
    ||||||  || ||||  |||||||||||| || |||| ||||    |||   u
    guaacc  ca uccu  uUCAUUAGACGU GG CUCC Gauc    cgu   c
---c      gu  c    uc            U  U    U    --ga   ugc 

Annotation confidence High

Genome context

chr8: 15368653-15368760 [-]

Mature vvi-miR2111-5p

• Accession: MIMAT0016364
• Description: Vitis vinifera vvi-miR2111-5p mature miRNA
• Sequence: 23 - UAAUCUGCAUCCUGAGGUCUA - 43
• Evidence: not_experimental

Mature vvi-miR2111-3p

• Accession: MIMAT0016365
• Description: Vitis vinifera vvi-miR2111-3p mature miRNA
• Sequence: 69 - GUCCUCUGGUUGCAGAUUACU - 89
• Evidence: not_experimental

References

1. PubMed ID: 19854858
   Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
   "Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ"
   "Plant Physiol (2009) 151:2120-2132