miRBase entry: gga-mir-3526

Stem-loop gga-mir-3526


Accession
MI0015377
Description
Gallus gallus gga-mir-3526 precursor miRNA


Sequence

32 reads, 2 reads per million, 4 experiments
gaucucgacuuuauuuuuccucuuuguaguuauauuuuuggaguagcuguuugucuucucgcagcuuucccaauaaagcaacuccagugucagaaUUGAAGAUGAAGUUGGUGUc
(((.((((((((((((((..((((((.((((......((((...((((((..(....)..))))))...))))......)))).)))....)))...)))))))))))))).)))

Structure
   c              -cc   ----   u    auauuu    agu      uu u 
gau ucgacuuuauuuuu   ucu    uug aguu      uugg   agcugu  g c
||| ||||||||||||||   |||    ||| ||||      ||||   ||||||  |  
cUG GGUUGAAGUAGAAG   aga    gac ucaa      aacc   ucgacg  c u
   U              UUa   cugu   c    cgaaau    cuu      cu u 


Annotation confidence Not enough data
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Genome context
chr3: 15593875-15593989 [+]

Database links

Mature gga-miR-3526

Accession MIMAT0016375
Description Gallus gallus gga-miR-3526 mature miRNA
Sequence 96 - UUGAAGAUGAAGUUGGUGU - 114
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19891781
    Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
    Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
    BMC Genomics (2009) 10:512