miRBase entry: rno-mir-3074

Stem-loop rno-mir-3074


Accession
MI0015411
Description
Rattus norvegicus rno-mir-3074 precursor miRNA
Gene family
MIPF0001103; mir-3074


Sequence

259153 reads, 19 reads per million, 493 experiments
gcuuuuugcucaagggcucgacuccuguuccugcugaacugagccagugugugaaaugagaacuGAUAUCAGCUCAGUAGGCACCGgagggcggguccaaucacagcugggcagugc
((...(((((((.(((((((.((((.((.((((((((.((((..((((.............))))...)))).)))))))).)).))))..))))))).........))))))).))

Structure
  uuu       --------a       -a    u  u        a    -gc    gugug 
gc   uugcuca         gggcucg  cucc gu ccugcuga cuga   cagu     a
||   |||||||         |||||||  |||| || |||||||| ||||   ||||     a
cg   gacgggu         ccugggc  gagG CA GGAUGACU GACU   Guca     a
  --u       cgacacuaa       gg    C  C        C    AUA    agagu 


Annotation confidence Not enough data
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Genome context
chr17: 823940-824056 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from rno-mir-3074
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3074

Accession MIMAT0017815
Description Rattus norvegicus rno-miR-3074 mature miRNA
Sequence 65 - GAUAUCAGCUCAGUAGGCACCG - 86
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249