miRBase entry: rno-mir-191b

Stem-loop rno-mir-191b


Accession
MI0015413
Description
Rattus norvegicus rno-mir-191b precursor miRNA
Gene family
MIPF0000194; mir-191

Literature search
19 open access papers mention rno-mir-191b
(42 sentences)

Sequence

13586817 reads, 7 reads per million, 510 experiments
cagggcgcugcucaggcaggagagcaggGAACGAAAUCCAAGUGCAGCUggaaugcucuggagacaacagcugcuuuugggauuccguugcccgcuguccagccauuggaggagggcucu
.(((((.((.(((.(((.(((.(((.((.((((.((((((((.(((((((.....((....))....))))))).))).))))).)))).)).))).))).)))....))).)).)))))

Structure
c     g  g   ---a   a   g   a  G    A     -   U       gaaug  c 
 agggc cu cuc    ggc gga agc gg AACG AAUCC AAG GCAGCUg     cu u
 ||||| || |||    ||| ||| ||| || |||| ||||| ||| |||||||     ||  
 ucucg ga gag    ccg ccu ucg cc uugc uuagg uuu cgucgac     ga g
-     g  g   guua   a   g   c  g    c     g   u       -aaca  g 


Annotation confidence Not enough data
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Genome context
chr8: 117354348-117354467 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-191b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-191b

Accession MIMAT0017817
Description Rattus norvegicus rno-miR-191b mature miRNA
Sequence 29 - GAACGAAAUCCAAGUGCAGCU - 49
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249