miRBase entry: rno-mir-291b

Stem-loop rno-mir-291b


Accession
MI0015417
Description
Rattus norvegicus rno-mir-291b precursor miRNA
Gene family
MIPF0000068; mir-290

Literature search
4 open access papers mention rno-mir-291b
(50 sentences)

Sequence

250 reads, 3 reads per million, 55 experiments
cggaucuuggaaguuggaacacaggguccaucaaaguggaggcccucuccguggcuuggcgggAAAGUGCAUCCAUUUUGUUAGUcucugugucccgcuggacucacc
..(((((....(((.(((.(((((((.(...(((((((((.((.((.(((((......)))))..)).)).)))))))))...).)))))))))).)))))).))...

Structure
-cg  -   ugga   u   a       u cau         g  c  -c     gg 
   ga ucu    agu gga cacaggg c   caaagugga gc cu  uccgu  c
   || |||    ||| ||| ||||||| |   ||||||||| || ||  |||||   
   cu agg    ucg ccu gugucuc G   GUUUUACCU CG GA  gggcg  u
cca  c   ----   c   -       U AUU         A  U  AA     gu 


Annotation confidence Not enough data
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Genome context
chr1: 64537831-64537938 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from rno-mir-291b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-291b

Accession MIMAT0017822
Description Rattus norvegicus rno-miR-291b mature miRNA
Sequence 64 - AAAGUGCAUCCAUUUUGUUAGU - 85
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249