miRBase entry: rno-mir-3596d

Stem-loop rno-mir-3596d


Accession
MI0015418
Description
Rattus norvegicus rno-mir-3596d precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
1 open access papers mention rno-mir-3596d
(2 sentences)

Sequence

8449002 reads, 0 reads per million, 510 experiments
acuccucagggaaggcaauagauuguauaguuaucuccuaaacaggguaaaaucacuaccccacaaCUAUACAAUCUACUACCUCAcucugauagag
.(((.((((((.(((...((((((((((((((............(((((.......)))))...))))))))))))))...)))..))))))..)))

Structure
a   -c      -a   caa              aucuccuaaaca     aa 
 cuc  ucaggg  agg   uagauuguauaguu            gggua  a
 |||  ||||||  |||   ||||||||||||||            |||||  u
 gag  agucuc  UCC   AUCUAACAUAUCaa            cccau  c
-   au      AC   AUC              ---------cac     ca 


Annotation confidence Not enough data
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Genome context
chr17: 16418217-16418313 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from rno-mir-3596d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3596d

Accession MIMAT0017823
Description Rattus norvegicus rno-miR-3596d mature miRNA
Sequence 67 - CUAUACAAUCUACUACCUCA - 86
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249