miRBase entry: rno-mir-3562

Stem-loop rno-mir-3562


Accession
MI0015424
Description
Rattus norvegicus rno-mir-3562 precursor miRNA

Literature search
2 open access papers mention rno-mir-3562
(8 sentences)

Sequence

17 reads, 2 reads per million, 13 experiments
ucugguauaucaggcuugcugugauUUGGGGCAGUGGCUGGAUGGGAggggacucacagcccuaucucuagugcaaccccuguccccacaggucuagagccugagauccaga
(((((....((((((((.(((((....(((((((.((.((.((((((((((........)))).))))..)).)).)).)))))))))))).....))))))))...)))))

Structure
     uaua        ----g     auUU       U  C  G  --    -    acu 
ucugg    ucaggcuu     cugug    GGGGCAG GG UG AU  GGGA gggg   c
|||||    ||||||||     |||||    ||||||| || || ||  |||| ||||    
agacc    aguccgag     gacac    cccuguc cc ac ug  cucu uccc   a
     -uag        aucug     ----       c  a  g  au    a    gac 


Annotation confidence Not enough data
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Genome context
chr10: 109246744-109246855 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-3562
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3562

Accession MIMAT0017832
Description Rattus norvegicus rno-miR-3562 mature miRNA
Sequence 26 - UUGGGGCAGUGGCUGGAUGGGA - 47
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249