Stem-loop sequence rno-mir-3562

Accession MI0015424
Description Rattus norvegicus miR-3562 stem-loop
Stem-loop 
     uaua        ----g     auuu       u  c  g  g    ---   acu 
ucugg    ucaggcuu     cugug    ggggcag gg ug au ggag   ggg   c
|||||    ||||||||     |||||    ||||||| || || || ||||   |||    
agacc    aguccgag     gacac    cccuguc cc ac ug ucuc   ccc   a
     -uag        aucug     ----       c  a  g  a    uau   gac
Get sequence
Genome context
Coordinates (RGSC3.4) Overlapping transcripts
10: 109478589-109478700 [-]
sense
ENSRNOT00000005977 ; Azi1; exon 18
ENSRNOT00000005977 ; Azi1; exon 18
ENSRNOT00000067144 ; D3Z8V1_RAT; exon 20
ENSRNOT00000067144 ; D3Z8V1_RAT; exon 20
Clustered miRNAs
< 10kb from rno-mir-3562
rno-mir-3562 10: 109478589-109478700 [-]
rno-mir-3594 10: 109476482-109476546 [-]
Database links

Mature sequence rno-miR-3562

Accession MIMAT0017832
Sequence

26 -  

uuggggcaguggcuggauggga

 - 47

Get sequence
Evidence experimental; SOLiD [1]
Predicted targets

References

1
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).