Stem-loop rno-mir-299b

Accession

MI0015425

Description

Rattus norvegicus rno-mir-299b precursor miRNA

Gene family

MIPF0000186; mir-299

Literature search

1 open access papers mention rno-mir-299b
(1 sentences)

Sequence

11982 reads, 242 reads per million, 335 experiments

cggacuggauggcugggcuggauaccaagaagCGGUUUACCGUCCCACAUACauacucaaaaugUAUGUGGGACGGUAAACcauuucuucaaguaccgcgugacagcagggacagcug
(((.(((....((((.(((((.(((.((((((.(((((((((((((((((((((.......))))))))))))))))))))).))))))...)))))).))..)))).....))))))

Structure

   a   -gaug    -g  -   a   --c      C                     ac 
cgg cug     gcug  gc ugg uac   aagaag GGUUUACCGUCCCACAUACau  u
||| |||     ||||  || ||| |||   |||||| |||||||||||||||||||||  c
guc gac     cgac  ug gcc aug   uucuuu cCAAAUGGCAGGGUGUAUgua  a
   -   aggga    ag  c   -   aac      a                     aa 

Annotation confidence Not enough data

Genome context

chr6: 133859295-133859412 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from rno-mir-299b

Mature rno-miR-299b-5p

• Accession: MIMAT0017833
• Description: Rattus norvegicus rno-miR-299b-5p mature miRNA
• Sequence: 33 - CGGUUUACCGUCCCACAUAC - 52
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-299b-3p

• Accession: MIMAT0017834
• Description: Rattus norvegicus rno-miR-299b-3p mature miRNA
• Sequence: 65 - UAUGUGGGACGGUAAAC - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249