Stem-loop sequence rno-mir-299b

Accession

MI0015425

Previous IDs

rno-mir-3563

Description

Rattus norvegicus miR-299b stem-loop

Gene family

MIPF0000186; mir-299

Stem-loop

   a   ga -g    -g  -   a   --c      c                     ac 
cgg cug  u  gcug  gc ugg uac   aagaag gguuuaccgucccacauacau  u
||| |||  |  ||||  || ||| |||   |||||| |||||||||||||||||||||  c
guc gac  g  cgac  ug gcc aug   uucuuu ccaaauggcaggguguaugua  a
   -   ag ga    ag  c   -   aac      a                     aa 

Genome context

• Coordinates (RGSC3.4): 6: 134389793-134389910 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-299b

• rno-mir-495: 6: 134399218-134399297 [+]
• rno-mir-543: 6: 134397158-134397237 [+]
• rno-mir-666: 6: 134397021-134397119 [+]
• rno-mir-679: 6: 134395062-134395198 [+]
• rno-mir-494: 6: 134394868-134394950 [+]
• rno-mir-329: 6: 134392666-134392762 [+]
• rno-mir-758: 6: 134391996-134392073 [+]
• rno-mir-323: 6: 134391697-134391782 [+]
• rno-mir-380: 6: 134390988-134391064 [+]
• rno-mir-3579: 6: 134390971-134391083 [-]
• rno-mir-299a: 6: 134389822-134389884 [+]
• rno-mir-299b: 6: 134389793-134389910 [-]
• rno-mir-411: 6: 134389347-134389422 [+]
• rno-mir-379: 6: 134388198-134388282 [+]

Database links

• ENTREZGENE: 100526578;Mir3563

Mature sequence rno-miR-299b-5p

• Accession: MIMAT0017833
• Previous IDs: rno-miR-3563-5p
• Sequence: 33 - cgguuuaccgucccacauac - 52
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • MIRDB:rno-miR-299b-5p

Mature sequence rno-miR-299b-3p

• Accession: MIMAT0017834
• Previous IDs: rno-miR-3563-3p
• Sequence: 65 - uaugugggacgguaaac - 81
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • MIRDB:rno-miR-299b-3p

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).