miRBase entry: rno-mir-344a-2

Stem-loop rno-mir-344a-2


Accession
MI0015432
Description
Rattus norvegicus rno-mir-344a-2 precursor miRNA
Gene family
MIPF0000267; mir-344

Literature search
8 open access papers mention rno-mir-344a-2
(74 sentences)

Sequence

9284 reads, 43 reads per million, 148 experiments
gcagccaggguuuuuaccagUCAGGCUCCUGGCUAGAUUccagguaccaacugguaccugaucuagccaaagccugacuguaagcuguaaaaacaaaggaagacugc
((((((...((((((((((((((((((..(((((((((..((((((((....))))))))))))))))).))))))))))......))))))))...))....))))

Structure
    ----  agg        ------          CC         Uc        a 
gcag    cc   guuuuuac      cagUCAGGCU  UGGCUAGAU  cagguacc a
||||    ||   ||||||||      ||||||||||  |||||||||  ||||||||  
cguc    gg   caaaaaug      gucaguccga  accgaucua  guccaugg c
    agaa  aaa        ucgaau          -a         --        u 


Annotation confidence Not enough data
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Genome context
chr1: 122373262-122373368 [-]

Database links

Mature rno-miR-344a-5p

Accession MIMAT0004654
Description Rattus norvegicus rno-miR-344a-5p mature miRNA
Sequence 21 - UCAGGCUCCUGGCUAGAUU - 39
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249