Stem-loop rno-mir-208b

Accession

MI0015434

Description

Rattus norvegicus rno-mir-208b precursor miRNA

Literature search

74 open access papers mention rno-mir-208b
(287 sentences)

Sequence

180749 reads, 449.0 reads per million, 231 experiments

acccccaccuccugcuccucucagggAAGCUUUUUGCUCGCGUUAUGUUucucauccgaauAUAAGACGAACAAAAGGUUUGUcugagggcugagugcacccaccuggggua
(((((........((((((((((((.((((((((((.(((..((((((((.......))))))))..))).)))))))))).))))))))..))))..........))))).

Structure

-     --caccuccu    --        g          C   CG        cu 
 acccc          gcuc  cucucagg AAGCUUUUUG UCG  UUAUGUUu  c
 |||||          ||||  |||||||| |||||||||| |||  ||||||||  a
 ugggg          ugag  gggagucU UUUGGAAAAC AGC  AAUAuaag  u
a     uccacccacg    uc        G          A   AG        cc 

Annotation confidence High

Genome context

chr15: 33639510-33639621 [-]

Mature rno-miR-208b-5p

• Accession: MIMAT0017844
• Description: Rattus norvegicus rno-miR-208b-5p mature miRNA
• Sequence: 27 - AAGCUUUUUGCUCGCGUUAUGUU - 49
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-208b-3p

• Accession: MIMAT0017845
• Description: Rattus norvegicus rno-miR-208b-3p mature miRNA
• Sequence: 62 - AUAAGACGAACAAAAGGUUUGU - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249