Stem-loop sequence rno-mir-216b

Accession

MI0015435 (change log)

Description

Rattus norvegicus miR-216b stem-loop

Gene family

MIPF0000054; mir-216

Literature search

12 open access papers mention rno-mir-216b
(39 sentences)

Stem-loop

   ----ugcac    g        ga            --caaa      g  ac 
5'          guug cagacugg  aaucucugcagg      ugugau uc  u
            |||| ||||||||  ||||||||||||      |||||| ||   
3'          caac gucugacu  uuagagauguuc      acacua ag  g
   uacgaacua    a        uc            auucac      a  aa 

Deep sequencing

44192 reads, 125 reads per million, 153 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr14: 113101078-113101179 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir216b
• miRBase Tracker:MI0015435

Mature sequence rno-miR-216b-5p

• Accession: MIMAT0017846
• Sequence: 20 - aaaucucugcaggcaaauguga - 41
• Deep sequencing: 31338 reads, 139 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-216b-5p
  • miRDB:rno-miR-216b-5p

Mature sequence rno-miR-216b-3p

• Accession: MIMAT0017847
• Sequence: 59 - cacacuuacuuguagagauu - 78
• Deep sequencing: 12790 reads, 85 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-216b-3p
  • miRDB:rno-miR-216b-3p

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).