Stem-loop rno-mir-3568

Accession

MI0015436

Description

Rattus norvegicus rno-mir-3568 precursor miRNA

Literature search

1 open access papers mention rno-mir-3568
(6 sentences)

Sequence

39 reads, 13 reads per million, 31 experiments

ugcaccaaacaccagugggcuUGUUCUUCCCGUGCAGAAGCAGcagagauaucaggcugguugggcccuggaagaacuagccacuuggugugacugggcag
(((.(((.((((((((((.((.((((((((.(.((..((.((((.((....))..)))).))..)).).)))))))).)))))).))))))...)))))).

Structure

-   a   --a      -    g  U        C U  AG  G    -a  g 
 ugc cca   acacca gugg cu GUUCUUCC G GC  AA CAGc  ga a
 ||| |||   |||||| |||| || |||||||| | ||  || ||||  ||  
 acg ggu   uguggu cacc ga caagaagg c cg  uu gucg  cu u
g   -   cag      u    -  u        u c  gg  g    ga  a 

Annotation confidence Not enough data

Genome context

chr10: 10855034-10855134 [-]

Mature rno-miR-3568

• Accession: MIMAT0017848
• Description: Rattus norvegicus rno-miR-3568 mature miRNA
• Sequence: 22 - UGUUCUUCCCGUGCAGAAGCAG - 43
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249