miRBase entry: rno-mir-3570

Stem-loop rno-mir-3570


Accession
MI0015438
Description
Rattus norvegicus rno-mir-3570 precursor miRNA


Sequence

36319462 reads, 0 reads per million, 509 experiments
aguagauaaugguuagcuauagGGUACAAUCAACGGUCGAUGGUuuuuauuugaauuccaaacucaccgacagcguugaauguucacugaagcaaccugugagccagaggugugcug
..........((((.(((.(((...(((.((((((((((.((((((.............)))).)).))))..)))))).)))...))).)))))))....(((((....)).))).

Structure
----------aguagauaau    a   a   GGU   A      --    A  -    uuauu 
                    gguu gcu uag   ACA UCAACG  GUCG UG GUuu     u
                    |||| ||| |||   ||| ||||||  |||| || ||||     g
                    ccaa cga guc   ugu aguugc  cagc ac caaa     a
gucguguggagaccgagugu    -   a   acu   a      ga    c  u    ccuua 


Annotation confidence Not enough data
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Genome context
chr13: 54952723-54952839 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-3570
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3570

Accession MIMAT0017850
Description Rattus norvegicus rno-miR-3570 mature miRNA
Sequence 23 - GGUACAAUCAACGGUCGAUGGU - 44
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249