Stem-loop rno-mir-3574

Accession

MI0015446

Description

Rattus norvegicus rno-mir-3574 precursor miRNA

Literature search

1 open access papers mention rno-mir-3574
(2 sentences)

Sequence

52528 reads, 0 reads per million, 493 experiments

gccagggguucgcgcugcccagggacagaUCAGCCGCUGUCACACGCACAGuggguccggagcaacgcagugugcugugggcaguggcuguccugagccuggagggacugccccggug
(((.(((((...(.((..(((((..(((..(((((((((((.((((((((.((.((........)).)).))))).))))))))))))))..)))..))))))).)...)))))))).

Structure

-   a     ucg g  gc     ga   aU           A   -     G  g  ccg 
 gcc ggggu   c cu  ccagg  cag  CAGCCGCUGUC CAC GCACA ug gu   g
 ||| |||||   | ||  |||||  |||  ||||||||||| ||| ||||| || ||    
 ugg ccccg   g ga  ggucc  guc  gucggugacgg gug cgugu ac ca   a
g   -     uca g  --     ga   cu           -   u     g  g  acg 

Annotation confidence Not enough data

Genome context

chr1: 214208349-214208466 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-3574

Mature rno-miR-3574

• Accession: MIMAT0017860
• Description: Rattus norvegicus rno-miR-3574 mature miRNA
• Sequence: 30 - UCAGCCGCUGUCACACGCACAG - 51
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249