Stem-loop sequence rno-mir-3574

Accession

MI0015446 (change log)

Description

Rattus norvegicus miR-3574 stem-loop

Literature search

1 open access papers mention rno-mir-3574
(2 sentences)

Stem-loop

   -   a     ucg g  gc     ga   au           a   -     g  g  ccg 
5'  gcc ggggu   c cu  ccagg  cag  cagccgcuguc cac gcaca ug gu   g
    ||| |||||   | ||  |||||  |||  ||||||||||| ||| ||||| || ||    
3'  ugg ccccg   g ga  ggucc  guc  gucggugacgg gug cgugu ac ca   a
   g   -     uca g  --     ga   cu           -   u     g  g  acg 

Deep sequencing

13 reads, 0 reads per million, 12 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr1: 214208349-214208466 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-3574

• rno-mir-3574: chr1: 214208349-214208466 [+]
• rno-mir-210: chr1: 214208355-214208464 [-]

Database links

• EntrezGene:Mir3574
• miRBase Tracker:MI0015446

Mature sequence rno-miR-3574

• Accession: MIMAT0017860
• Sequence: 30 - ucagccgcugucacacgcacag - 51
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3574
  • miRDB:rno-miR-3574

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).