miRBase entry: rno-mir-1912

Stem-loop rno-mir-1912


Accession
MI0015450
Description
Rattus norvegicus rno-mir-1912 precursor miRNA
Gene family
MIPF0000768; mir-1912


Sequence

1403 reads, 13 reads per million, 70 experiments
acuagucucuaggaugUGCUCAUUGCAUGGGCUAUGUagauuucuauuuaauaCACAGAACAUGCAGUGAGAacuugauagagauugg
.((((((((((....((.(((((((((((..((.((((.............)))).))..))))))))))).))....))))))))))

Structure
a          ggau  G           GG  A    gauuu 
 cuagucucua    gU CUCAUUGCAUG  CU UGUa     c
 ||||||||||    || |||||||||||  || ||||     u
 gguuagagau    ca GAGUGACGUAC  GA ACau     a
-          aguu  A           AA  C    aauuu 


Annotation confidence Not enough data
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Genome context
chrX: 118130652-118130739 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-1912
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-1912-5p

Accession MIMAT0017864
Description Rattus norvegicus rno-miR-1912-5p mature miRNA
Sequence 17 - UGCUCAUUGCAUGGGCUAUGU - 37
Evidence experimental
SOLiD [1]

Mature rno-miR-1912-3p

Accession MIMAT0017865
Description Rattus norvegicus rno-miR-1912-3p mature miRNA
Sequence 54 - CACAGAACAUGCAGUGAGA - 72
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249