miRBase entry: rno-mir-3596b

Stem-loop rno-mir-3596b


Accession
MI0015455
Description
Rattus norvegicus rno-mir-3596b precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention rno-mir-3596b
(3 sentences)

Sequence

1149743 reads, 0 reads per million, 507 experiments
ggcccuaagaaaggcagcaggucguauaguuaacuccuugugggcaaaaucucugcccuaaAACUAUGCAACCUACUACCUcuuccuaggagccc
(((((((.((((((.((.((((.((((((((......(((.(((((.......)))))))))))))))).)))).)).))).))).)))).))).

Structure
-   -    a   -   c  c    c        aacucc   u     aa 
 ggc ccua gaa agg ag aggu guauaguu      uug gggca  a
 ||| |||| ||| ||| || |||| ||||||||      ||| |||||  u
 ccg ggau cuu UCC UC UCCA CGUAUCAA      aau cccgu  c
c   a    c   c   A  A    A        ------   -     cu 


Annotation confidence Not enough data
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Genome context
chr17: 16419981-16420075 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from rno-mir-3596b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3596b

Accession MIMAT0017871
Description Rattus norvegicus rno-miR-3596b mature miRNA
Sequence 62 - AACUAUGCAACCUACUACCU - 81
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249