Stem-loop rno-mir-133c

Accession

MI0015456

Description

Rattus norvegicus rno-mir-133c precursor miRNA

Gene family

MIPF0000029; mir-133

Literature search

61 open access papers mention rno-mir-133c
(233 sentences)

Sequence

31466817 reads, 0 reads per million, 491 experiments

gcuggcuguccuguggcaaucaaugcauagcuaCAGCUGGUUGAAGGGGACCAAauccauugaagaggcgauuugguuccauuuuaccagcuuuagcaaagcauugccgcugcugguu
((((((......((((((....((((...((((.(((((((.(((.((((((((((((.........).))))))))))).))).))))))).))))...)))))))))).)))))).

Structure

-      uguccu      auca    aua    C       U   G           - auu 
 gcuggc      guggca    augc   gcua AGCUGGU GAA GGGACCAAauc c   g
 ||||||      ||||||    ||||   |||| ||||||| ||| ||||||||||| |   a
 uggucg      cgccgu    uacg   cgau ucgacca uuu ccuugguuuag g   a
u      -----u      ----    aaa    u       u   a           c gag 

Annotation confidence Not enough data

Genome context

chr18: 2052459-2052576 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-133c

Mature rno-miR-133c

• Accession: MIMAT0017872
• Description: Rattus norvegicus rno-miR-133c mature miRNA
• Sequence: 34 - CAGCUGGUUGAAGGGGACCAA - 54
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249