Stem-loop rno-mir-3583

Accession

MI0015457

Description

Rattus norvegicus rno-mir-3583 precursor miRNA

Literature search

1 open access papers mention rno-mir-3583
(2 sentences)

Sequence

308 reads, 36 reads per million, 140 experiments

cacuaauggugAGCAUGAAGAGUUCAGAUCACGUUcaugaagugcugaugaaCCUGACUUCUCUCUUCAUGCAGuugucuaucuuggugc
((((((.(((((((((((((((...((.(((.((((((.(.....).)))))).)))))...)))))))))).....)).))))))))).

Structure

-      u   -  -----          UUC  A   C      g a 
 cacuaa ggu gA     GCAUGAAGAG   AG UCA GUUcau a g
 |||||| ||| ||     ||||||||||   || ||| |||||| | u
 gugguu cua cu     CGUACUUCUC   UC AGU Caagua u g
c      -   u  guuGA          UCU  -   C      g c 

Annotation confidence Not enough data

Genome context

chr5: 150732605-150732694 [+]

Mature rno-miR-3583-5p

• Accession: MIMAT0017873
• Description: Rattus norvegicus rno-miR-3583-5p mature miRNA
• Sequence: 12 - AGCAUGAAGAGUUCAGAUCACGUU - 35
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3583-3p

• Accession: MIMAT0017874
• Description: Rattus norvegicus rno-miR-3583-3p mature miRNA
• Sequence: 53 - CCUGACUUCUCUCUUCAUGCAG - 74
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249