Stem-loop sequence rno-mir-3596c

Accession

MI0015459 (change log)

Description

Rattus norvegicus miR-3596c stem-loop

Gene family

MIPF0001194; mir-3596

Literature search

3 open access papers mention rno-mir-3596c
(3 sentences)

Stem-loop

   c   uu  ag   agg    ag      gaa  c       cc       -  ucuccuc   u 
5'  ccc  cc  ugc   gcgc  ccuggg   ag uaggagg  guauagu ga       ggg g
    |||  ||  |||   ||||  ||||||   || |||||||  ||||||| ||       ||| u
3'  ggg  gg  acg   cgcg  gggccc   uc auccucc  cauauca cu       ccu c
   -   -u  --   --g    gg      gac  c       aa       a  -------   u 

Deep sequencing

51 reads, 0 reads per million, 31 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr1: 59704372-59704488 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-3596c

• rno-mir-125a: chr1: 59704827-59704911 [+]
• rno-let-7e: chr1: 59704381-59704473 [+]
• rno-mir-3596c: chr1: 59704372-59704488 [-]
• rno-mir-99b: chr1: 59704216-59704285 [+]

Database links

• EntrezGene:Mir3596c
• miRBase Tracker:MI0015459

Mature sequence rno-miR-3596c

• Accession: MIMAT0017877
• Sequence: 74 - acuauacaaccuccuaccuca - 94
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3596c
  • miRDB:rno-miR-3596c

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).