miRBase entry: rno-mir-3585

Stem-loop rno-mir-3585


Accession
MI0015460
Description
Rattus norvegicus rno-mir-3585 precursor miRNA
Gene family
MIPF0000130; mir-506

Literature search
1 open access papers mention rno-mir-3585
(2 sentences)

Sequence

100404 reads, 836 reads per million, 436 experiments
gccacauggagcaaaucugugugcagugcuuUUCACAAGAAGGUGUCUUUCAUggggauuaaaacaUGAACGGCCCUUGUUGUGAggaguaauguacaacauguaaugccuguguggu
(((((((((.(((...(((((((((.((((((((((((.((((.(((.((((((..........)))))).))))))).)))))))))))).))))).))).)...))))))))))))

Structure
         a   aau -   -     g            G    U   U      ggga 
gccacaugg gca   c ugu gugca ugcuuUUCACAA AAGG GUC UUCAUg    u
||||||||| |||   | ||| ||||| |||||||||||| |||| ||| ||||||     
ugguguguc cgu   g aca caugu augaggAGUGUU UUCC CGG AAGUac    u
         -   aau u   a     a            G    -   C      aaaa 


Annotation confidence High
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Genome context
chrX: 155344176-155344293 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-3585
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3585-5p

Accession MIMAT0017878
Description Rattus norvegicus rno-miR-3585-5p mature miRNA
Sequence 32 - UUCACAAGAAGGUGUCUUUCAU - 53
Evidence experimental
SOLiD [1]

Mature rno-miR-3585-3p

Accession MIMAT0017879
Description Rattus norvegicus rno-miR-3585-3p mature miRNA
Sequence 67 - UGAACGGCCCUUGUUGUGA - 85
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249