Stem-loop rno-mir-3588

Accession

MI0015466

Description

Rattus norvegicus rno-mir-3588 precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

2 open access papers mention rno-mir-3588
(7 sentences)

Sequence

2370301 reads, 1 reads per million, 496 experiments

cugcugguaccucuccgccuaggucccaagagccugacuugugauguuacuaaaauaccUCACAAGUUAGGGUCUCAGGGAcuaggaaaagucugguuugaugcag
((((....(((.((...(((((.((((.(((.((((((((((((.((.........)).)))))))))))).)))..)))))))))...))...))).....))))

Structure

    -uggu   --u  ccg     g    -a   g            u  uac 
cugc     acc   cu   ccuag uccc  aga ccugacuuguga gu   u
||||     |||   ||   ||||| ||||  ||| |||||||||||| ||   a
gacg     ugg   ga   ggauc AGGG  UCU GGAUUGAACACU ca   a
    uaguu   ucu  aaa     -    AC   G            c  uaa 

Annotation confidence Not enough data

Genome context

chr11: 16097337-16097442 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-3588

Mature rno-miR-3588

• Accession: MIMAT0017887
• Description: Rattus norvegicus rno-miR-3588 mature miRNA
• Sequence: 60 - UCACAAGUUAGGGUCUCAGGGA - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249