miRBase entry: rno-mir-3590

Stem-loop rno-mir-3590


Accession
MI0015468
Description
Rattus norvegicus rno-mir-3590 precursor miRNA

Literature search
1 open access papers mention rno-mir-3590
(1 sentences)

Sequence

305131 reads, 3 reads per million, 502 experiments
ggccgaUGCCCUUUUAACAUUGCACUGcucgguacacguguagacagUAGCACAAUGUGAAAAGAGCUCcggcc
(((((..((.(((((.((((((..(((((...(((....)))...)))))..)))))).))))).))..)))))

Structure
     aU  C     A      CA     cgg   a 
ggccg  GC CUUUU ACAUUG  CUGcu   uac c
|||||  || ||||| ||||||  |||||   |||  
ccggc  CG GAAAA UGUAAC  GAUga   aug g
     CU  A     G      AC     cag   u 


Annotation confidence Not enough data
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Genome context
chr3: 72141044-72141117 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-3590
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3590-5p

Accession MIMAT0017889
Description Rattus norvegicus rno-miR-3590-5p mature miRNA
Sequence 7 - UGCCCUUUUAACAUUGCACUG - 27
Evidence experimental
SOLiD [1]

Mature rno-miR-3590-3p

Accession MIMAT0017890
Description Rattus norvegicus rno-miR-3590-3p mature miRNA
Sequence 48 - UAGCACAAUGUGAAAAGAGCUC - 69
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249