miRBase entry: rno-mir-1249

Stem-loop rno-mir-1249


Accession
MI0015470
Description
Rattus norvegicus rno-mir-1249 precursor miRNA
Gene family
MIPF0000667; mir-1249

Literature search
1 open access papers mention rno-mir-1249
(1 sentences)

Sequence

55530 reads, 67 reads per million, 462 experiments
ucuugcugcuccgauucuuguuugcauggggaggagggaggggaugggccaaguucccuaugccuggaACGCCCUUCCCCCCCUUCUUCAccuggcgaacuccuacucguccuucaagac
(((((..(...(((.....((((((..(((((((((((.(((((.((((...(((((........))))))))).)))))))))))))).))..))))))......)))..)..))))).

Structure
-     cu cuc   -uucuu      au  -         a     u    caa     cua 
 ucuug  g   cga      guuugc  gg ggaggaggg gggga gggc   guucc   u
 |||||  |   |||      ||||||  || ||||||||| ||||| ||||   |||||    
 agaac  c   gcu      caagcg  cc CUUCUUCCC CCCCU CCCG   CAagg   g
c     uu -cu   cauccu      gu  A         -     U    ---     ucc 


Annotation confidence Not enough data
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Genome context
chr7: 125861192-125861311 [-]

Database links

Mature rno-miR-1249

Accession MIMAT0017892
Description Rattus norvegicus rno-miR-1249 mature miRNA
Sequence 69 - ACGCCCUUCCCCCCCUUCUUCA - 90
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249