Stem-loop rno-mir-3592

Accession

MI0015473

Description

Rattus norvegicus rno-mir-3592 precursor miRNA

Gene family

MIPF0001166; mir-3578

Literature search

1 open access papers mention rno-mir-3592
(1 sentences)

Sequence

68339 reads, 0 reads per million, 409 experiments

guccuuagagguagcauuugguacugaaaaAAGUGUUGUCCGUGAAUGAUUcgucacaaguaaagcgaauccaccacgaacaacuucucuucaaguaccacagaaaagcagagaca
(((((........((.((((((((((((...((.(((((.((((...(((((((..........)))))))...)))).)))))..)).))).)))))))....)).)))).))).

Structure

-   -  uagaggua  a  ----       -   aaA  -U     C    AAU       caca 
 guc cu        gc uu    ugguacu gaa   AG  GUUGU CGUG   GAUUcgu    a
 ||| ||        || ||    ||||||| |||   ||  ||||| ||||   |||||||     
 cag ga        cg aa    accauga cuu   uc  caaca gcac   cuaagcg    g
a   a  --------  a  agac       a   --c  uu     a    cac       aaau 

Annotation confidence Not enough data

Genome context

chr6: 133884161-133884276 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from rno-mir-3592

Mature rno-miR-3592

• Accession: MIMAT0017895
• Description: Rattus norvegicus rno-miR-3592 mature miRNA
• Sequence: 31 - AAGUGUUGUCCGUGAAUGAUU - 51
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249