miRBase entry: rno-mir-3593

Stem-loop rno-mir-3593


Accession
MI0015474
Description
Rattus norvegicus rno-mir-3593 precursor miRNA


Sequence

75 reads, 36 reads per million, 67 experiments
ccaucaccacacgacuggauuuUGGCCUCCGCAGGGUUGAAGCUgcuagagaagCUUCAACCUUAAGGGGGCCUCAgggagagaggagugg
.........(((..((...(((((((((((..((((((((((((........))))))))))))..)))))))...))))...))..))).

Structure
ccaucacca   ga  gga    ---       GC            gcu 
         cac  cu   uuuU   GGCCUCC  AGGGUUGAAGCU   a
         |||  ||   ||||   |||||||  ||||||||||||    
         gug  ga   aggg   CCGGGGG  UUCCAACUUCga   g
--------g   ag  gag    ACU       AA            aga 


Annotation confidence Not enough data
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Genome context
chr6: 76661799-76661889 [-]

Database links

Mature rno-miR-3593-5p

Accession MIMAT0017896
Description Rattus norvegicus rno-miR-3593-5p mature miRNA
Sequence 23 - UGGCCUCCGCAGGGUUGAAGCU - 44
Evidence experimental
SOLiD [1]

Mature rno-miR-3593-3p

Accession MIMAT0017897
Description Rattus norvegicus rno-miR-3593-3p mature miRNA
Sequence 55 - CUUCAACCUUAAGGGGGCCUCA - 76
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249