Stem-loop rno-mir-3594

Accession

MI0015475

Description

Rattus norvegicus rno-mir-3594 precursor miRNA

Literature search

1 open access papers mention rno-mir-3594
(1 sentences)

Sequence

833 reads, 2 reads per million, 201 experiments

ggcagagCCCAGGGCAGAGCAGUGUGAAcagcgcuugucuuCACACCGCCUCUGCCCGCUAGUgu
.(((.(((...(((((((((.(((((((..((....)).))))))).).)))))))))))..)))

Structure

g   -g   CCA        - A       ca  g 
 gca  agC   GGGCAGAG C GUGUGAA  gc c
 |||  |||   |||||||| | |||||||  ||  
 ugU  UCG   CCCGUCUC G CACACuu  ug u
-   GA   ---        C C       -c  u 

Annotation confidence Low

Genome context

chr10: 109244637-109244701 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-3594

Mature rno-miR-3594-5p

• Accession: MIMAT0017898
• Description: Rattus norvegicus rno-miR-3594-5p mature miRNA
• Sequence: 8 - CCCAGGGCAGAGCAGUGUGAA - 28
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3594-3p

• Accession: MIMAT0017899
• Description: Rattus norvegicus rno-miR-3594-3p mature miRNA
• Sequence: 42 - CACACCGCCUCUGCCCGCUAGU - 63
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249