miRBase entry: rno-mir-3594

Stem-loop rno-mir-3594


Accession
MI0015475
Description
Rattus norvegicus rno-mir-3594 precursor miRNA

Literature search
1 open access papers mention rno-mir-3594
(1 sentences)

Sequence

833 reads, 13 reads per million, 201 experiments
ggcagagCCCAGGGCAGAGCAGUGUGAAcagcgcuugucuuCACACCGCCUCUGCCCGCUAGUgu
.(((.(((...(((((((((.(((((((..((....)).))))))).).)))))))))))..)))

Structure
g   -g   CCA        - A       ca  g 
 gca  agC   GGGCAGAG C GUGUGAA  gc c
 |||  |||   |||||||| | |||||||  ||  
 ugU  UCG   CCCGUCUC G CACACuu  ug u
-   GA   ---        C C       -c  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr10: 109244637-109244701 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-3594
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3594-5p

Accession MIMAT0017898
Description Rattus norvegicus rno-miR-3594-5p mature miRNA
Sequence 8 - CCCAGGGCAGAGCAGUGUGAA - 28
Evidence experimental
SOLiD [1]

Mature rno-miR-3594-3p

Accession MIMAT0017899
Description Rattus norvegicus rno-miR-3594-3p mature miRNA
Sequence 42 - CACACCGCCUCUGCCCGCUAGU - 63
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249