miRBase entry: rno-mir-3120

Stem-loop rno-mir-3120


Accession
MI0015476
Description
Rattus norvegicus rno-mir-3120 precursor miRNA
Gene family
MIPF0000062; mir-214

Literature search
2 open access papers mention rno-mir-3120
(2 sentences)

Sequence

52855 reads, 15 reads per million, 469 experiments
gguugucauucaggcuggguugucaugugacugccugucugugccugcuguacaggugagcggauguucugCACAGCAAGUGUAGACAGGCAgacacaugacaacucuguccaucca
((.((.......(((.(((((((((((((.((((((((((((((.((((((.((((...........)))).)))))).)))))))))))))).))))))))))))).))))).)).

Structure
-  u  ucauuca   u             a              c      a    ugag 
 gg ug       ggc ggguugucaugug cugccugucugugc ugcugu cagg    c
 || ||       ||| ||||||||||||| |||||||||||||| |||||| ||||    g
 cc ac       cug cucaacaguacac gACGGACAGAUGUG ACGACA gucu    g
a  u  -------   u             a              A      C    ugua 


Annotation confidence Not enough data
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Genome context
chr13: 80130909-80131025 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-3120
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3120

Accession MIMAT0017900
Description Rattus norvegicus rno-miR-3120 mature miRNA
Sequence 72 - CACAGCAAGUGUAGACAGGCA - 92
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249