miRBase entry: rno-mir-3595

Stem-loop rno-mir-3595


Accession
MI0015478
Description
Rattus norvegicus rno-mir-3595 precursor miRNA
Gene family
MIPF0000091; mir-368


Sequence

reads, None reads per million, experiments
gugguuucccaagcagcauuugauacugaaaacGUGGAUUUUCCUCUACGAUuagucauuaauauuguacucauagaaggagaaucuaccuuuuaaauaucaaagaacaacucgauccag
.(((..((..........(((((((...((((.(((((((((((((((.((...((((.......)).)))).))).)))))))))))).))))...))))))).........)).))).

Structure
g   uu  ccaagcagca       cug    c            -   C  Uua  -  uu 
 ugg  uc          uuugaua   aaaa GUGGAUUUUCCU CUA GA   gu ca  a
 |||  ||          |||||||   |||| |||||||||||| ||| ||   || ||  a
 acc  ag          aaacuau   uuuu caucuaagagga gau cu   ca gu  u
g   -u  -cucaacaag       aaa    c            a   a  ---  u  ua 


Annotation confidence Not enough data
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Genome context
chr6: 133873587-133873706 [-]
Clustered miRNAs
17 other miRNAs are < 10 kb from rno-mir-3595
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3595

Accession MIMAT0017903
Description Rattus norvegicus rno-miR-3595 mature miRNA
Sequence 34 - GUGGAUUUUCCUCUACGAU - 52
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249