miRBase entry: cin-mir-1

Stem-loop cin-mir-1


Accession
MI0015480
Description
Ciona intestinalis cin-mir-1 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
2 open access papers mention cin-mir-1
(3 sentences)

Sequence

9878 reads, 3930 reads per million, 2 experiments
ACCUACUUCUUUACAUCUUCauagacuaagaauaccguggcugacauuucaauugcaguuccggcaacuuauaUGGAAUGUAAAGAAGUAUGCGU
...(((((((((((((.((((((...((((....(((.(((((.((.......))))))).)))...))))))))))))))))))))))).....

Structure
--ACC             C      gac    aaua   u     a  uu 
     UACUUCUUUACAU UUCaua   uaag    ccg ggcug ca  u
     ||||||||||||| ||||||   ||||    ||| ||||| ||  c
     AUGAAGAAAUGUA AGGUau   auuc    ggc uugac gu  a
UGCGU             -      ---    -aac   c     -  ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
1q: 5268751-5268845 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-1-5p

Accession MIMAT0016392
Description Ciona intestinalis cin-miR-1-5p mature miRNA
Sequence 1 - ACCUACUUCUUUACAUCUUC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-1-3p

Accession MIMAT0016393
Description Ciona intestinalis cin-miR-1-3p mature miRNA
Sequence 74 - UGGAAUGUAAAGAAGUAUGCGU - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39