Stem-loop sequence cin-mir-182

Accession MI0015490
Description Ciona intestinalis miR-182 stem-loop
Stem-loop 
c              aa     gu     g    
 uuggcaaaauauag  cucac  uggau uua 
 ||||||||||||||  |||||  ||||| || a
 agccguuuuauguc  gggug  accua agu 
c              --     --     g
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Genome context
Coordinates (JGI2) Overlapping transcripts
scaffold_36: 551325-551387 [+]
intergenic
Clustered miRNAs
< 10kb from cin-mir-182
cin-mir-183 scaffold_36: 549852-549931 [+]
cin-mir-96 scaffold_36: 550854-550906 [+]
cin-mir-182 scaffold_36: 551325-551387 [+]
Database links
  • ENTREZGENE: 100498866;mir182

Mature sequence cin-miR-182-5p

Accession MIMAT0016411
Sequence

1 -  

cuuggcaaaauauagaacuc

 - 20

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Evidence experimental; Solexa [1]

Mature sequence cin-miR-182-3p

Accession MIMAT0016412
Sequence

44 -  

gugggcuguauuuugccgac

 - 63

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Evidence experimental; Solexa [1]

References

1
PMID:20370911 "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data" Hendrix D, Levine M, Shi W Genome Biol. 11:R39(2010).