miRBase entry: cin-mir-182

Stem-loop cin-mir-182


Accession
MI0015490
Description
Ciona intestinalis cin-mir-182 precursor miRNA


Sequence

396 reads, 186 reads per million, 2 experiments
CUUGGCAAAAUAUAGAACUCacguuggauguuaaugagauccaGUGGGCUGUAUUUUGCCGAC
.((((((((((((((..(((((..(((((.((...)).)))))))))))))))))))))))).

Structure
C              AA     gu     g  a 
 UUGGCAAAAUAUAG  CUCac  uggau uu  
 ||||||||||||||  |||||  ||||| || a
 AGCCGUUUUAUGUC  GGGUG  accua ag  
C              --     --     g  u 


Annotation confidence Not enough data
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Genome context
scaffold_36: 551325-551387 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cin-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-182-5p

Accession MIMAT0016411
Description Ciona intestinalis cin-miR-182-5p mature miRNA
Sequence 1 - CUUGGCAAAAUAUAGAACUC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-182-3p

Accession MIMAT0016412
Description Ciona intestinalis cin-miR-182-3p mature miRNA
Sequence 44 - GUGGGCUGUAUUUUGCCGAC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39