Stem-loop sequence cin-mir-367

Accession MI0015492
Description Ciona intestinalis miR-367 stem-loop
Stem-loop 
ag        --        g   uaaua 
  ugcuauuc  augugcaa agu     c
  ||||||||  |||||||| |||      
  augguaag  uacacguu ucg     a
--        gu        a   ugccg
Get sequence
Genome context
Coordinates (JGI2) Overlapping transcripts
1q: 161118-161173 [-]
sense
ENSCINT00000029545 ; F6T368_CIOIN; intron 3
ENSCINT00000024158 ; F6RMP0_CIOIN; intron 14
ENSCINT00000003220 ; F6RZM2_CIOIN; intron 16
ENSCINT00000003217 ; F6RZN0_CIOIN; intron 17
ENSCINT00000024158 ; F6RMP0_CIOIN; intron 20
ENSCINT00000003220 ; F6RZM2_CIOIN; intron 21
ENSCINT00000003217 ; F6RZN0_CIOIN; intron 23
1q: 166124-166179 [-]
sense
ENSCINT00000029545 ; F6T368_CIOIN; intron 3
ENSCINT00000024158 ; F6RMP0_CIOIN; intron 14
ENSCINT00000003220 ; F6RZM2_CIOIN; intron 16
ENSCINT00000003217 ; F6RZN0_CIOIN; intron 17
ENSCINT00000024158 ; F6RMP0_CIOIN; intron 20
ENSCINT00000003220 ; F6RZM2_CIOIN; intron 21
ENSCINT00000003217 ; F6RZN0_CIOIN; intron 23
scaffold_368: 39820-39875 [+]
sense
ENSCINT00000029545 ; F6T368_CIOIN; intron 3
ENSCINT00000024158 ; F6RMP0_CIOIN; intron 14
ENSCINT00000003220 ; F6RZM2_CIOIN; intron 16
ENSCINT00000003217 ; F6RZN0_CIOIN; intron 17
ENSCINT00000024158 ; F6RMP0_CIOIN; intron 20
ENSCINT00000003220 ; F6RZM2_CIOIN; intron 21
ENSCINT00000003217 ; F6RZN0_CIOIN; intron 23
Clustered miRNAs
< 10kb from cin-mir-367
cin-mir-367 1q: 166124-166179 [-]
cin-mir-4009c 1q: 166023-166075 [-]
cin-mir-4009b 1q: 165807-165858 [-]
cin-mir-367 1q: 161118-161173 [-]
cin-mir-4009c 1q: 161017-161069 [-]
cin-mir-4009a 1q: 160902-160954 [-]
cin-mir-4009b 1q: 160807-160858 [-]
Database links
  • ENTREZGENE: 100499090;mir367

Mature sequence cin-miR-367-5p

Accession MIMAT0016415
Sequence

1 -  

agugcuauucaugugcaaga

 - 20

Get sequence
Evidence experimental; Solexa [1]

Mature sequence cin-miR-367-3p

Accession MIMAT0016416
Sequence

37 -  

uauugcacauuggaauggua

 - 56

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:20370911 "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data" Hendrix D, Levine M, Shi W Genome Biol. 11:R39(2010).