miRBase entry: cin-mir-4000d

Stem-loop cin-mir-4000d


Accession
MI0015499
Description
Ciona intestinalis cin-mir-4000d precursor miRNA
Gene family
MIPF0000867; mir-4000


Sequence

6553 reads, 2101 reads per million, 2 experiments
UGAAACUUGCAAGAACGGGCcuuguucuaacaaGUCCUUUCCAACAGGUUUC
.((((((((...(((.((((.((((....)))))))).)))...))))))))

Structure
U        CAA   C    c    u 
 GAAACUUG   GAA GGGC uugu c
 ||||||||   ||| |||| ||||  
 CUUUGGAC   CUU CCUG aaca u
-        AAC   U    -    a 


Annotation confidence Not enough data
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Genome context
7q: 5400845-5400896 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from cin-mir-4000d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4000d-5p

Accession MIMAT0016428
Description Ciona intestinalis cin-miR-4000d-5p mature miRNA
Sequence 1 - UGAAACUUGCAAGAACGGGC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4000d-3p

Accession MIMAT0016429
Description Ciona intestinalis cin-miR-4000d-3p mature miRNA
Sequence 34 - GUCCUUUCCAACAGGUUUC - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39