miRBase entry: cin-mir-4000a-1

Stem-loop cin-mir-4000a-1


Accession
MI0015500
Description
Ciona intestinalis cin-mir-4000a-1 precursor miRNA
Gene family
MIPF0000867; mir-4000


Sequence

18428 reads, 5788 reads per million, 2 experiments
CGAAACUUGCGUGGAACAGGcuguuagaauccaGCCUUUUCAUGUAAAUUUCCAU
.((((.((((((((((.((((((........)))))))))))))))).))))...

Structure
--C    C          C      uua 
   GAAA UUGCGUGGAA AGGcug   g
   |||| |||||||||| ||||||    
   CUUU AAUGUACUUU UCCGac   a
UAC    A          -      cua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
7q: 5398797-5398851 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from cin-mir-4000a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4000a-3p

Accession MIMAT0016431
Description Ciona intestinalis cin-miR-4000a-3p mature miRNA
Sequence 34 - GCCUUUUCAUGUAAAUUUCCAU - 55
Evidence experimental
Illumina [1]

Mature cin-miR-4000a-5p

Accession MIMAT0016430
Description Ciona intestinalis cin-miR-4000a-5p mature miRNA
Sequence 1 - CGAAACUUGCGUGGAACAGG - 20
Evidence

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39