Stem-loop cin-mir-4000b-1

Accession

MI0015501

Description

Ciona intestinalis cin-mir-4000b-1 precursor miRNA

Gene family

MIPF0000867; mir-4000

Sequence

105859 reads, 34125 reads per million, 2 experiments

UGAAACUUGCAGGAACGGGCcuuguucuagcaaGUCCUUUCCAACAGGUUUCGC
.((((((((..((((.((((.((((....)))))))).))))..))))))))..

Structure

-U        CA    C    c    u 
  GAAACUUG  GGAA GGGC uugu c
  ||||||||  |||| |||| ||||  
  CUUUGGAC  CCUU CCUG aacg u
CG        AA    U    -    a 

Annotation confidence Not enough data

Genome context

7q: 5401203-5401256 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from cin-mir-4000b-1

Mature cin-miR-4000b-5p

• Accession: MIMAT0016432
• Description: Ciona intestinalis cin-miR-4000b-5p mature miRNA
• Sequence: 1 - UGAAACUUGCAGGAACGGGC - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4000b-1-3p

• Accession: MIMAT0016433
• Description: Ciona intestinalis cin-miR-4000b-1-3p mature miRNA
• Sequence: 34 - GUCCUUUCCAACAGGUUUCGC - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39