miRBase entry: cin-mir-4000e

Stem-loop cin-mir-4000e


Accession
MI0015502
Description
Ciona intestinalis cin-mir-4000e precursor miRNA


Sequence

8164 reads, 2721 reads per million, 2 experiments
UGAAACUUCUUCGGAACAGGccgguuuaaaaucuuauccuauaugggcaagguuucgauuucccGGCCUCUCUCGGAGGUUUCA
((((((((((..(((..(((((((.((.(((((((.(((.....))).))))))).))....))))))).))).))))))))))

Structure
          UC   AC       ---u  a       a   u 
UGAAACUUCU  GGA  AGGccgg    uu aaaucuu ucc a
||||||||||  |||  |||||||    || ||||||| ||| u
ACUUUGGAGG  UCU  UCCGGcc    ag uuuggaa ggg a
          -C   -C       cuuu  c       c   u 


Annotation confidence High
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Genome context
3p: 1538091-1538174 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from cin-mir-4000e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4000e-5p

Accession MIMAT0016434
Description Ciona intestinalis cin-miR-4000e-5p mature miRNA
Sequence 1 - UGAAACUUCUUCGGAACAGG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4000e-3p

Accession MIMAT0016435
Description Ciona intestinalis cin-miR-4000e-3p mature miRNA
Sequence 65 - GGCCUCUCUCGGAGGUUUCA - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39