miRBase entry: cin-mir-4000f

Stem-loop cin-mir-4000f


Accession
MI0015505
Description
Ciona intestinalis cin-mir-4000f precursor miRNA


Sequence

1238 reads, 461 reads per million, 2 experiments
UGAAACUUCGCUGGAACAGGccgggugacccGAGCUGUUCACGAAGUUUUA
((((((((((...((((((..((((...))))..)))))).))))))))))

Structure
          CUG      Gc    u 
UGAAACUUCG   GAACAG  cggg  
||||||||||   ||||||  |||| g
AUUUUGAAGC   CUUGUC  Gccc  
          --A      GA    a 


Annotation confidence High
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Genome context
3p: 1538921-1538971 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from cin-mir-4000f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4000f-5p

Accession MIMAT0016436
Description Ciona intestinalis cin-miR-4000f-5p mature miRNA
Sequence 1 - UGAAACUUCGCUGGAACAGG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4000f-3p

Accession MIMAT0016437
Description Ciona intestinalis cin-miR-4000f-3p mature miRNA
Sequence 32 - GAGCUGUUCACGAAGUUUUA - 51
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39