miRBase entry: cin-mir-4000g

Stem-loop cin-mir-4000g


Accession
MI0015506
Description
Ciona intestinalis cin-mir-4000g precursor miRNA


Sequence

35260 reads, 11230 reads per million, 2 experiments
UGAAACUUCUUUAGAAAGGGccugcuuuagGCUCAUUCUAGGACGUUUUA
((((((.((((.((((.(((((((...))))))).)))))))).))))))

Structure
      U    U    A       c 
UGAAAC UCUU AGAA GGGccug  
|||||| |||| |||| ||||||| u
AUUUUG AGGA UCUU CUCGgau  
      C    -    A       u 


Annotation confidence Not enough data
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Genome context
7q: 5412928-5412977 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from cin-mir-4000g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4000g-5p

Accession MIMAT0016438
Description Ciona intestinalis cin-miR-4000g-5p mature miRNA
Sequence 1 - UGAAACUUCUUUAGAAAGGG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4000g-3p

Accession MIMAT0016439
Description Ciona intestinalis cin-miR-4000g-3p mature miRNA
Sequence 31 - GCUCAUUCUAGGACGUUUUA - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39