miRBase entry: cin-mir-4000h

Stem-loop cin-mir-4000h


Accession
MI0015507
Description
Ciona intestinalis cin-mir-4000h precursor miRNA


Sequence

45411 reads, 14359 reads per million, 2 experiments
UGAAACUUGCUUAGUACGGGccugaguaagGCCGUUCUUUGCAAGUUUUGUU
.(((((((((..((.((((.(((.....))))))).))..)))))))))...

Structure
--U         UU  U    G   g 
   GAAACUUGC  AG ACGG ccu a
   |||||||||  || |||| ||| g
   UUUUGAACG  UC UGCC Gga u
UUG         UU  U    -   a 


Annotation confidence Not enough data
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Genome context
7q: 5412693-5412744 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from cin-mir-4000h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4000h-5p

Accession MIMAT0016440
Description Ciona intestinalis cin-miR-4000h-5p mature miRNA
Sequence 1 - UGAAACUUGCUUAGUACGGG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4000h-3p

Accession MIMAT0016441
Description Ciona intestinalis cin-miR-4000h-3p mature miRNA
Sequence 31 - GCCGUUCUUUGCAAGUUUUGUU - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39