miRBase entry: cin-mir-4001b-2

Stem-loop cin-mir-4001b-2


Accession
MI0015521
Description
Ciona intestinalis cin-mir-4001b-2 precursor miRNA


Sequence

4899 reads, 1625 reads per million, 2 experiments
UGGAACUUGCAUGAACAGGCuguuuauauucaGUCUGUUUUACCAAGGUCC
.(((.((((...((((((((((........))))))))))...)))).)))

Structure
U   A    CAU          uuu 
 GGA CUUG   GAACAGGCug   a
 ||| ||||   ||||||||||    
 CCU GAAC   UUUGUCUGac   u
-   G    CAU          uua 


Annotation confidence Not enough data
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Genome context
7q: 5413505-5413555 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from cin-mir-4001b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4001b-5p

Accession MIMAT0016446
Description Ciona intestinalis cin-miR-4001b-5p mature miRNA
Sequence 1 - UGGAACUUGCAUGAACAGGC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4001b-2-3p

Accession MIMAT0016975
Description Ciona intestinalis cin-miR-4001b-2-3p mature miRNA
Sequence 33 - GUCUGUUUUACCAAGGUCC - 51
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39