Stem-loop sequence cin-mir-4003c

AccessionMI0015524 (change log)
DescriptionCiona intestinalis miR-4003c stem-loop
Stem-loop
   u a    gu  u         aa   a 
5'  g guug  ua cauuguugc  ugu a
    | ||||  || |||||||||  ||| g
3'  c uaac  au guagcaaug  aca u
   a g    ug  u         --   a 
Get sequence
Deep sequencing
38 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (JGI2) Overlapping transcripts
7q: 6151685-6151739 [-]
intergenic
Clustered miRNAs
< 10kb from cin-mir-4003c
cin-mir-4077d7q: 6165860-6165915 [-]
cin-mir-4077b7q: 6155725-6155780 [-]
cin-mir-4003b7q: 6154672-6154730 [-]
cin-mir-4005b7q: 6154057-6154110 [-]
cin-mir-4077d7q: 6153229-6153284 [-]
cin-mir-4003a-17q: 6152459-6152516 [-]
cin-mir-4003c7q: 6151685-6151739 [-]
cin-mir-4077a7q: 6150979-6151034 [-]
cin-mir-4003a-47q: 6150122-6150179 [-]
cin-mir-4003d7q: 6148874-6148927 [-]
Database links

Mature sequence cin-miR-4003c-5p

Accession MIMAT0016465
Sequence

1 - 

ugaguugguuaucauuguug

 - 20

Get sequence
Deep sequencing34 reads, 2 experiments
Evidence experimental; Illumina [1]

Mature sequence cin-miR-4003c-3p

Accession MIMAT0016466
Sequence

36 - 

uaacgauguuagucaaugca

 - 55

Get sequence
Deep sequencing4 reads, 2 experiments
Evidence experimental; Illumina [1]

References

1