miRBase entry: cin-mir-4003a-3

Stem-loop cin-mir-4003a-3


Accession
MI0015526
Description
Ciona intestinalis cin-mir-4003a-3 precursor miRNA
Gene family
MIPF0000840; mir-4003


Sequence

72 reads, 32 reads per million, 2 experiments
UGAGUUGGUUAUACAUUCUUgcaguauuuaaguauaauagCAAGAAUUUUAACCAACACA
...((((((((...((((((((..((((.......))))))))))))..))))))))...

Structure
UGA        UAC        ag    ua 
   GUUGGUUA   AUUCUUgc  uauu  a
   ||||||||   ||||||||  ||||  g
   CAACCAAU   UAAGAACg  auaa  u
ACA        -UU        --    ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
7q: 6168261-6168320 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cin-mir-4003a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4003a-5p

Accession MIMAT0016461
Description Ciona intestinalis cin-miR-4003a-5p mature miRNA
Sequence 1 - UGAGUUGGUUAUACAUUCUU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4003a-3p

Accession MIMAT0016462
Description Ciona intestinalis cin-miR-4003a-3p mature miRNA
Sequence 41 - CAAGAAUUUUAACCAACACA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39