Stem-loop cin-mir-4003b

Accession

MI0015529

Description

Ciona intestinalis cin-mir-4003b precursor miRNA

Gene family

MIPF0000840; mir-4003

Sequence

1 reads, 1 reads per million, 1 experiments

UGAGUUGGUUAUUCAAUCUUGCGauauuuaacaguagCAAGAUUGGUAACCAACACUAA
...(((((((((.(((((((((..............)))))))))))))))))).....

Structure

--UGA         U         Gauauu 
     GUUGGUUAU CAAUCUUGC      u
     ||||||||| |||||||||       
     CAACCAAUG GUUAGAACg      a
AAUCA         -         augaca 

Annotation confidence Not enough data

Genome context

7q: 6154672-6154730 [-]

Clustered miRNAs

8 other miRNAs are < 10 kb from cin-mir-4003b

Mature cin-miR-4003b-5p

• Accession: MIMAT0016469
• Description: Ciona intestinalis cin-miR-4003b-5p mature miRNA
• Sequence: 1 - UGAGUUGGUUAUUCAAUCUUGCG - 23
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4003b-3p

• Accession: MIMAT0016470
• Description: Ciona intestinalis cin-miR-4003b-3p mature miRNA
• Sequence: 38 - CAAGAUUGGUAACCAACACUAA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39