miRBase entry: cin-mir-4006b

Stem-loop cin-mir-4006b


Accession
MI0015531
Description
Ciona intestinalis cin-mir-4006b precursor miRNA


Sequence

21831 reads, 7132 reads per million, 2 experiments
UGGAACAUGUACGUAAGGGCugcguuuccaGCUAUUACUUAUAUGUUGCA
((.((((((((.((((.(((((......))))).)))).)))))))).))

Structure
  G        C    G     cg 
UG AACAUGUA GUAA GGCug  u
|| |||||||| |||| |||||   
AC UUGUAUAU CAUU UCGac  u
  G        U    A     cu 


Annotation confidence Not enough data
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Genome context
7q: 5402317-5402366 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from cin-mir-4006b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4006b-5p

Accession MIMAT0016472
Description Ciona intestinalis cin-miR-4006b-5p mature miRNA
Sequence 1 - UGGAACAUGUACGUAAGGGC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4006b-3p

Accession MIMAT0016473
Description Ciona intestinalis cin-miR-4006b-3p mature miRNA
Sequence 31 - GCUAUUACUUAUAUGUUGCA - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39