miRBase entry: cin-mir-4006c

Stem-loop cin-mir-4006c


Accession
MI0015532
Description
Ciona intestinalis cin-mir-4006c precursor miRNA


Sequence

32211 reads, 10259 reads per million, 2 experiments
UGGAACAUGUAAAUAAGGGCuguuuaucgcaUCCUUUGUUUCUAUGUUUCA
(((((((((.(((((((((.(((.....))).))))))))).)))))))))

Structure
         U         C   u 
UGGAACAUG AAAUAAGGG ugu u
||||||||| ||||||||| ||| a
ACUUUGUAU UUUGUUUCC acg u
         C         U   c 


Annotation confidence Not enough data
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Genome context
7q: 5413621-5413671 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from cin-mir-4006c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4006c-5p

Accession MIMAT0016474
Description Ciona intestinalis cin-miR-4006c-5p mature miRNA
Sequence 1 - UGGAACAUGUAAAUAAGGGC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4006c-3p

Accession MIMAT0016475
Description Ciona intestinalis cin-miR-4006c-3p mature miRNA
Sequence 32 - UCCUUUGUUUCUAUGUUUCA - 51
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39