miRNA Entry for MI0015532

Stem-loop sequence cin-mir-4006c

Accession

MI0015532

Description

Ciona intestinalis miR-4006c stem-loop

Stem-loop

u        u         c   u 
 ggaacaug aaauaaggg ugu u
 |||||||| ||||||||| ||| a
 cuuuguau uuuguuucc acg u
a        c         u   c

Genome context

Coordinates (JGI2)	Overlapping transcripts
7q: 5413621-5413671 [-]	antisense ENSCINT00000015751 ; F6SJL3_CIOIN; intron 21 ENSCINT00000015772 ; F6SIN5_CIOIN; intron 22 ENSCINT00000015758 ; F6SJH3_CIOIN; intron 23

Clustered miRNAs

< 10kb from cin-mir-4006c
cin-mir-4006d	7q: 5413757-5413810 [-]
cin-mir-4006c	7q: 5413621-5413671 [-]
cin-mir-4001b-2	7q: 5413505-5413555 [-]
cin-mir-4000i	7q: 5413395-5413447 [-]
cin-mir-4006g	7q: 5413284-5413333 [-]
cin-mir-4001e	7q: 5413168-5413216 [-]
cin-mir-4001d	7q: 5413021-5413079 [-]
cin-mir-4000g	7q: 5412928-5412977 [-]
cin-mir-4006f	7q: 5412796-5412848 [-]
cin-mir-4000h	7q: 5412693-5412744 [-]
cin-mir-4006b	7q: 5412601-5412650 [-]
cin-mir-4001b-1	7q: 5412482-5412542 [-]
cin-mir-4006e	7q: 5412237-5412283 [-]
cin-mir-4001a-1	7q: 5411814-5411865 [-]
cin-mir-4001a-2	7q: 5411381-5411431 [-]
cin-mir-4002	7q: 5411380-5411432 [+]
cin-mir-4001h	7q: 5411022-5411071 [-]
cin-mir-4000a-2	7q: 5410807-5410861 [-]
cin-mir-4006a-2	7q: 5410620-5410672 [-]
cin-mir-4006a-3	7q: 5410518-5410568 [-]
cin-mir-4006a-1	7q: 5410360-5410408 [-]
cin-mir-4006e	7q: 5403043-5403089 [-]
cin-mir-4001a-1	7q: 5402621-5402672 [-]
cin-mir-4006b	7q: 5402317-5402366 [-]
cin-mir-4006e	7q: 5401862-5401908 [-]
cin-mir-4001a-1	7q: 5401442-5401493 [-]
cin-mir-4001a-2	7q: 5401049-5401099 [-]
cin-mir-4002	7q: 5401048-5401100 [+]
cin-mir-4001h	7q: 5400692-5400741 [-]
cin-mir-4006a-3	7q: 5400214-5400264 [-]
cin-mir-4006a-1	7q: 5400066-5400114 [-]

Database links

ENTREZGENE: 100498887;mir4006c

Mature sequence cin-miR-4006c-5p
Accession	MIMAT0016474
Sequence	1 - uggaacauguaaauaagggc - 20 Get sequence
Evidence	experimental; Solexa [1]

Mature sequence cin-miR-4006c-3p
Accession	MIMAT0016475
Sequence	32 - uccuuuguuucuauguuuca - 51 Get sequence
Evidence	experimental; Solexa [1]

References
1	PMID:20370911 "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data" Hendrix D, Levine M, Shi W Genome Biol. 11:R39(2010).