miRBase entry: cin-mir-4006a-1

Stem-loop cin-mir-4006a-1


Accession
MI0015534
Description
Ciona intestinalis cin-mir-4006a-1 precursor miRNA


Sequence

91537 reads, 29624 reads per million, 2 experiments
UGGAACAUGUAAGUAAGGGCugucaaacaGUCAUUAUUUUCAUGCUUCA
((((.((((.((((((.((((((...)))))).)))))).)))).))))

Structure
    A    U      G      c 
UGGA CAUG AAGUAA GGCugu  
|||| |||| |||||| |||||| a
ACUU GUAC UUUAUU CUGaca  
    C    U      A      a 


Annotation confidence Not enough data
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Genome context
7q: 5400066-5400114 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from cin-mir-4006a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4006a-5p

Accession MIMAT0016478
Description Ciona intestinalis cin-miR-4006a-5p mature miRNA
Sequence 1 - UGGAACAUGUAAGUAAGGGC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4006a-1-3p

Accession MIMAT0016479
Description Ciona intestinalis cin-miR-4006a-1-3p mature miRNA
Sequence 30 - GUCAUUAUUUUCAUGCUUCA - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39