Stem-loop sequence cin-mir-4006f

Accession MI0015538
Description Ciona intestinalis miR-4006f stem-loop
Stem-loop 
---ug     u    g      c  uu 
     gaaca gcag uaaggg ug  u
     ||||| |||| |||||| ||   
     uuugu uguc auuccc ac  c
caaaa     c    a      a  cc
Get sequence
Genome context
Coordinates (JGI2) Overlapping transcripts
7q: 5412796-5412848 [-]
antisense
ENSCINT00000015751 ; F6SJL3_CIOIN; intron 21
ENSCINT00000015772 ; F6SIN5_CIOIN; intron 22
ENSCINT00000015758 ; F6SJH3_CIOIN; intron 23
Clustered miRNAs
< 10kb from cin-mir-4006f
cin-mir-4006d 7q: 5413757-5413810 [-]
cin-mir-4006c 7q: 5413621-5413671 [-]
cin-mir-4001b-2 7q: 5413505-5413555 [-]
cin-mir-4000i 7q: 5413395-5413447 [-]
cin-mir-4006g 7q: 5413284-5413333 [-]
cin-mir-4001e 7q: 5413168-5413216 [-]
cin-mir-4001d 7q: 5413021-5413079 [-]
cin-mir-4000g 7q: 5412928-5412977 [-]
cin-mir-4006f 7q: 5412796-5412848 [-]
cin-mir-4000h 7q: 5412693-5412744 [-]
cin-mir-4006b 7q: 5412601-5412650 [-]
cin-mir-4001b-1 7q: 5412482-5412542 [-]
cin-mir-4006e 7q: 5412237-5412283 [-]
cin-mir-4001a-1 7q: 5411814-5411865 [-]
cin-mir-4001a-2 7q: 5411381-5411431 [-]
cin-mir-4002 7q: 5411380-5411432 [+]
cin-mir-4001h 7q: 5411022-5411071 [-]
cin-mir-4000a-2 7q: 5410807-5410861 [-]
cin-mir-4006a-2 7q: 5410620-5410672 [-]
cin-mir-4006a-3 7q: 5410518-5410568 [-]
cin-mir-4006a-1 7q: 5410360-5410408 [-]
cin-mir-4006e 7q: 5403043-5403089 [-]
cin-mir-4001a-1 7q: 5402621-5402672 [-]
cin-mir-4006b 7q: 5402317-5402366 [-]
cin-mir-4006e 7q: 5401862-5401908 [-]
cin-mir-4001a-1 7q: 5401442-5401493 [-]
cin-mir-4001a-2 7q: 5401049-5401099 [-]
cin-mir-4002 7q: 5401048-5401100 [+]
cin-mir-4001h 7q: 5400692-5400741 [-]
cin-mir-4006a-3 7q: 5400214-5400264 [-]
cin-mir-4006a-1 7q: 5400066-5400114 [-]
Database links

Mature sequence cin-miR-4006f-5p

Accession MIMAT0016482
Sequence

1 -  

uggaacaugcagguaagggc

 - 20

Get sequence
Evidence experimental; Solexa [1]

Mature sequence cin-miR-4006f-3p

Accession MIMAT0016483
Sequence

31 -  

acccuuaacugucuguuuaaaac

 - 53

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:20370911 "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data" Hendrix D, Levine M, Shi W Genome Biol. 11:R39(2010).