Stem-loop sequence cin-mir-1502a

Accession

MI0015541

Description

Ciona intestinalis miR-1502a stem-loop

Gene family

MIPF0001213; mir-1502

Stem-loop

-    a     u     a      uaaacc 
 uuga cuuuc aagga uagguu      a
 |||| ||||| ||||| ||||||       
 aacu gaaag uucuu auccaa      a
c    -     -     a      caucaa 

Genome context

• Coordinates (JGI2): 3p: 1538791-1538849 [+]
• Overlapping transcripts:

  antisense

  ENSCINT00000004458 ; F6SS00_CIOIN; intron 5

Clustered miRNAs

< 10kb from cin-mir-1502a

• cin-mir-4001f: 3p: 1537068-1537166 [+]
• cin-mir-4000e: 3p: 1538091-1538174 [+]
• cin-mir-4001c: 3p: 1538302-1538360 [+]
• cin-mir-1502d: 3p: 1538443-1538501 [+]
• cin-mir-4018a: 3p: 1538558-1538610 [+]
• cin-mir-4019: 3p: 1538558-1538610 [-]
• cin-mir-1502b: 3p: 1538677-1538733 [+]
• cin-mir-4007: 3p: 1538791-1538848 [-]
• cin-mir-1502a: 3p: 1538791-1538849 [+]
• cin-mir-4000f: 3p: 1538921-1538971 [+]
• cin-mir-4001i: 3p: 1539042-1539094 [+]
• cin-mir-4018b: 3p: 1539164-1539240 [+]
• cin-mir-1502c: 3p: 1540568-1540624 [+]

Database links

• ENTREZGENE: 100498892;mir1502a

Mature sequence cin-miR-1502a-5p

• Accession: MIMAT0016487
• Sequence: 1 - uugaacuuucuaaggaauag - 20
• Evidence: experimental; Solexa [1]

Mature sequence cin-miR-1502a-3p

• Accession: MIMAT0016488
• Sequence: 40 - ccuaauucuugaaagucaac - 59
• Evidence: experimental; Solexa [1]

References

1. PMID:20370911 "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data" Hendrix D, Levine M, Shi W Genome Biol. 11:R39(2010).