Stem-loop sequence cin-mir-1502d

Accession MI0015544
Description Ciona intestinalis miR-1502d stem-loop
Stem-loop 
-u    uu    a   a       uu uuu 
  gaac  uccc gga uaagucu  c   g
  ||||  |||| ||| |||||||  |    
  cuug  aggg ccu auucaga  g   u
cu    --    c   c       cu uau
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Genome context
Coordinates (JGI2) Overlapping transcripts
3p: 1538443-1538501 [+]
antisense
ENSCINT00000004458 ; F6SS00_CIOIN; intron 5
Clustered miRNAs
< 10kb from cin-mir-1502d
cin-mir-4001f 3p: 1537068-1537166 [+]
cin-mir-4000e 3p: 1538091-1538174 [+]
cin-mir-4001c 3p: 1538302-1538360 [+]
cin-mir-1502d 3p: 1538443-1538501 [+]
cin-mir-4018a 3p: 1538558-1538610 [+]
cin-mir-4019 3p: 1538558-1538610 [-]
cin-mir-1502b 3p: 1538677-1538733 [+]
cin-mir-4007 3p: 1538791-1538848 [-]
cin-mir-1502a 3p: 1538791-1538849 [+]
cin-mir-4000f 3p: 1538921-1538971 [+]
cin-mir-4001i 3p: 1539042-1539094 [+]
cin-mir-4018b 3p: 1539164-1539240 [+]
cin-mir-1502c 3p: 1540568-1540624 [+]
Database links

Mature sequence cin-miR-1502d-5p

Accession MIMAT0016493
Sequence

1 -  

ugaacuuucccaggaauaag

 - 20

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Evidence experimental; Solexa [1]

Mature sequence cin-miR-1502d-3p

Accession MIMAT0016494
Sequence

40 -  

acuuacucccgggaguucuc

 - 59

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:20370911 "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data" Hendrix D, Levine M, Shi W Genome Biol. 11:R39(2010).