Stem-loop cin-mir-4008b

Accession

MI0015546

Description

Ciona intestinalis cin-mir-4008b precursor miRNA

Sequence

9 reads, 6 reads per million, 2 experiments

UGGCAGUGAUCGCAAGUUAGcgcccuguaacagcuuaagcaacAGGGUCUAGCCUGCCUGCC
.(((((.....(((.(((((.(((((((....((....)).)))))))))))).))))))))

Structure

U     UGAUC   A     c       aaca  u 
 GGCAG     GCA GUUAG gcccugu    gc u
 |||||     ||| ||||| |||||||    ||  
 CCGUC     CGU CGAUC UGGGAca    cg a
-     -----   C     -       ---a  a 

Annotation confidence Not enough data

Genome context

10q: 2148360-2148421 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cin-mir-4008b

Mature cin-miR-4008b-5p

• Accession: MIMAT0016497
• Description: Ciona intestinalis cin-miR-4008b-5p mature miRNA
• Sequence: 1 - UGGCAGUGAUCGCAAGUUAG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4008b-3p

• Accession: MIMAT0016498
• Description: Ciona intestinalis cin-miR-4008b-3p mature miRNA
• Sequence: 44 - AGGGUCUAGCCUGCCUGCC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39